rs30947924 SNP Detail

Summary

• ID
  rs30947924
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138557831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATTTACTG CAAATTGGCT
  CTTATGCTAA TTACTGATTT ACAACTTATC TCAGTGGCTT GATGGTGAGT GCCTGGTCAG
  GGCATGAGCT CCGTGCTGAC CTCATCCATC AACACACACA CACACACACA CACACACACG
  CGCGCGCGCG CCCCAGAGTG TCCTGGCCAC CTGAGCCCTT GCAAAGTGTG CAGTGCTTGG
  M
  TGCGCCTCTA GCTCAGTGCT GACACTTGAA AGCCAGGACA TCACACTGCC ACTGTTACAG
  CTCCAGGGGC ATGGCTATCA GCTGGGCTGC CTTGATTTGT TACATATCTG AAAAAGAATG
  AGATTAGGTT GGGGTTGCAG GTCTTTAAAC CTTTGACCTT TGCAGTGTAA CAGGTAATTA
  CTTCAGCCTA CAAGGCCTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47001024	NES10875941	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30947924					SNP	A	A	A	A	A	A	A	A	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001024	NES10875941	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138557831 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr398073	regulatory region 398073			1949 bp upstream
Rr586211	regulatory region 586211			1604 bp distal
Rr586212	regulatory region 586212			within coordinates
Rr586213	regulatory region 586213			1046 bp proximal
Rr586214	regulatory region 586214			1812 bp proximal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant