rs30945659 SNP Detail

Summary

• ID
  rs30945659
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138517422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGAAATGT CCCAAATACA
  TGGCTCCTAA TATAGAACCC AACTTAAGGA AGTCTTTAGG CAAATGACAC CACTTGTATA
  ATGGTAGGTC ACAGCCCTCT AATGACTTGG AGTCAATGCT GGGTCATTCT GTGCCTGTGT
  GTTTCACAGA AGCAGAAACC TAGAGCCGCA AAACCAAGCA GGGAGGTTAC TGGAGCCTCA
  Y
  GGGGAGAACA CAGCTAAGGA TTCTGGTGGG CAGGCTCTTG GGAAACAGGA AGAGCGGAAA
  ACATTGCAAA TGAGTAGCAC CCCCATAGCT TCCAAAGGAG AGGTGAAGTC TTCACCGGAG
  TCCAAAACTG GCGATCCGGC GGCTGTCCTC TGAATGAGCA GAAATCCGAA AAAGGCAGCC
  GGAGTATGGT TTTTCAAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47000516	NES10877796	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30945659					SNP	C	C	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47000516	NES10877796	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138517422 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586203	regulatory region 586203			1667 bp proximal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant
Tssr32013	transcription start site region 32013			1857 bp upstream