rs30945303 SNP Detail

Summary

• ID
  rs30945303
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79053752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TATCAGCGGC TGTAGGTTAA GCAAGTCTCA GAGGGATGGA ATCCATTGAT TGCTGACTCC
  AAATAATATC ACTGAAGACA GGGTGGGAAA ACGGAGCAAG GACTTACTTG AACAGCTTTG
  AACTAAAATA TGAATTTTTT TTTAACCAAG GTGGGGAGAA AGGAATCAAT GTGACCTCTG
  CCCCACCCTC AAGTATTATT GTGCCATAGT AAATAAGACT GTCTTAAAAT TTATAAAATG
  CAGGCTTAGC AAGCTTTGTT AAATTTAGAA GATGAAATCA CACACACACA CACACACACA
  Y
  ACACACACAC ACACACACAC ACACACGCAC GCACGCACAG ATGCACATAT GGTCGTGTCA
  ATAATATTAT AATAAACCAC CTGGGTTGTT TTTTTTTTTA AACAAACCAA ACTTCTAGAG
  GTGGAACTGA AATTAATGAA GAAATGTTAT TCTCCCACGG TCTTAATTTC ACCTACGCAC
  ACAGGTTACC TGGGAGGAGG CTGCATTACA GCTGACGAGG AATAAAGACA CTTCCATCAG
  CTCTCACAAG CAGCTACACT TTTGAATGGA AGAGAGGACA GAAAGCAGTT ATGGAAAACA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss45482642	mCV25348379	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs30945303					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79053752 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rapgef2	Rap guanine nucleotide exchange factor (GEF) 2			Intron
				Noncoding-Transcript-Variant
Rr578466	regulatory region 578466			1939 bp distal
Rr578467	regulatory region 578467			978 bp distal
Rr578468	regulatory region 578468			80 bp distal
Tssr33632	transcription start site region 33632			515 bp upstream
Tssr33633	transcription start site region 33633			1056 bp downstream