rs30943482 SNP Detail

Summary

• ID
  rs30943482
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52661139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGATGGCT CAGCAGGGGA
  AGGAACTTGA TACCAAGCCT GAGAACCTGA GTTCCATCCT CGAGACCCAC ATAGGAGAGA
  GAAATGACTG CTGAAAGTTT TCCTCTGATC TCCACACCTA TACCTCAGAA TGCACATGAG
  TGTGGGCACA CAAACACACA CACACACACA CACACACACA CACACACACA CACACATACA
  Y
  AGAGTAATGA TTTTAAAAAA TTAAAGCATT TCGTTAATGT ATACTCTGGG TTTTCCTTCT
  GAAAAAGACA AGATATAGCC TCAGCAGTCT AGAGCATGAG ACCTGAAGGG CTGGTCCTAG
  AGAGGCTCCT TCAAGCTTTT TGAGCAAACT GCACTGTTAG CACTAAAGGT AGGTGTGAGT
  GTGCAAGCGT GTATGTGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45481826	mCV23179614	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss320765057	CHEV_3_52557640	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs30943482					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52661139 () rs orientation: forward

Symbol	Name	Function Class
Gm2447	predicted gene 2447	within coordinates
Rr576580	regulatory region 576580	730 bp proximal
Tssr33262	transcription start site region 33262	1327 bp downstream