rs30941976 SNP Detail

Summary

• ID
  rs30941976
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138519818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCTTAAA AGAGTAAGAC
  AAGCCAGCCT GAGGTCCAGA ATGGTCGGTA CTGATGCTGC ACCTTGGTCG TTGGTGGGAG
  AGATGAGATC AGTATTTAAC AGTTGGAGAA TTCTCAGTCT TGTCAATCAA AGCATATTAC
  ATGGGTGTTT CCACACCATT TGAAGTGATG ATTTAAATTC ATTTCTAGTT GTGAGCTGTG
  Y
  GAGAGTGGAC GCCCTGGGCT TTGGAAGCTG CTCTTTCTCC ACGTGGCCTT TTAAGCTGCG
  GTAGATGTTG GTGAGGAAAG GCGTTCCTGT GATGTTTTGT CTTTTCTTTT TTTCAACAAG
  TGGTTCCCCC CACCCCTGCT CCCACGAGAG GCAGGGTTTC TCTGTGTAGC CCTGGCTGTC
  CTGGAACTCC CTCTGTAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47000566	NES10877827	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30941976					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47000566	NES10877827	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138519818 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586203	regulatory region 586203			708 bp distal
Rr586204	regulatory region 586204			358 bp proximal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant
Tssr32013	transcription start site region 32013			514 bp downstream