rs30941974 SNP Detail

Summary

• ID
  rs30941974
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138519708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACTGATG CCCCGAGAGC
  CCGTGTTCTT AAGGTACCAA AGTGCTTTTG TGTTTGCTGC AGGATTATTT TAAGTCACAG
  GCGCACTTTG GAGATGATCA CCACTCACAT TTTGCTTAAA AGAGTAAGAC AAGCCAGCCT
  GAGGTCCAGA ATGGTCGGTA CTGATGCTGC ACCTTGGTCG TTGGTGGGAG AGATGAGATC
  R
  GTATTTAACA GTTGGAGAAT TCTCAGTCTT GTCAATCAAA GCATATTACA TGGGTGTTTC
  CACACCATTT GAAGTGATGA TTTAAATTCA TTTCTAGTTG TGAGCTGTGC GAGAGTGGAC
  GCCCTGGGCT TTGGAAGCTG CTCTTTCTCC ACGTGGCCTT TTAAGCTGCG GTAGATGTTG
  GTGAGGAAAG GCGTTCCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47000564	NES10877826	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30941974					SNP	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47000564	NES10877826	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138519708 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586203	regulatory region 586203			598 bp distal
Rr586204	regulatory region 586204			468 bp proximal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant
Tssr32013	transcription start site region 32013			404 bp downstream