rs30941257 SNP Detail

Summary

• ID
  rs30941257
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90518485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTGTTTTAC CCTAAGGCTC TGTCTTCAAC TTCCTAGTAG
  AGCCAGGGTG CAGGGACCAA ACTGGGAGGA GGACATCTGG TGCCAGGCCA GGTTTTAGGG
  Y
  AGGGGGCATG CTGGGTTCTC AGTTCCAGTA TACTGATCTT ACAGAGAGTG GTGATGTCTG
  GATCCTTTAC CAGCTTGGCC TTACAGTGCA AGCAGGATA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45481036	mCV24985138	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss135477172	ENSMUSSNP3900285	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
ss320838143	CHEV_3_90415100	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30941257					SNP	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90518485 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13468	CpG island 13468	1808 bp proximal
D3Nds7	DNA segment, Chr 3, Nuffield Department of Surgery 3	1414 bp distal
Rr580415	regulatory region 580415	1567 bp distal
Rr580416	regulatory region 580416	942 bp proximal
Rr580417	regulatory region 580417	1499 bp proximal
Rr580418	regulatory region 580418	1610 bp proximal
S100a5	S100 calcium binding protein A5	Intron
S100a6	S100 calcium binding protein A6 (calcyclin)	1704 bp upstream
Tssr30241	transcription start site region 30241	1783 bp downstream
Tssr30242	transcription start site region 30242	1094 bp upstream
Tssr30243	transcription start site region 30243	1654 bp upstream
Tssr30244	transcription start site region 30244	1691 bp upstream
Tssr30245	transcription start site region 30245	1722 bp upstream
Tssr30246	transcription start site region 30246	1968 bp upstream
Tssr30247	transcription start site region 30247	1998 bp upstream