rs30939198 SNP Detail

Summary

• ID
  rs30939198
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95858704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCGG GTCTCGCAAC GTTTGCCTAA
  Y
  GATTCCCAAT TTCAGTGTTG CATCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45481016	mCV25061967	ABI	CRAMUS_MOUSE	f	SNP	C	C						T
ss46778186	NES10734339	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T	C	C	T	C	C		C	C		C
ss135513197	ENSMUSSNP2683634	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
ss320841252	CHEV_3_95755315	CHEVERUD	SCREENING_POP	f	SNP											T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30939198					SNP	C	C	T	C	T	C	C	T	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46778186	NES10734339	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95858704 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13530	CpG island 13530	within coordinates
Gm56819	predicted gene, 56819	101 bp upstream
Gm65572	predicted gene, 65572	within coordinates
Rr375411	regulatory region 375411	within coordinates
Rr581095	regulatory region 581095	112 bp distal
Rr581096	regulatory region 581096	54 bp distal
Rr581097	regulatory region 581097	within coordinates
Rr581098	regulatory region 581098	1706 bp proximal
Tssr30663	transcription start site region 30663	306 bp downstream
Tssr30664	transcription start site region 30664	25 bp downstream
Tssr34570	transcription start site region 34570	356 bp upstream