TTCGG GTCTCGCAAC GTTTGCCTAA Y GATTCCCAAT TTCAGTGTTG CATCA Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
NOD/ShiLtJ |
NZW/LacJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss45481016 | mCV25061967 | ABI | CRAMUS_MOUSE | f | SNP | C | C | T | ||||||||||||
ss46778186 | NES10734339 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | T | C | T | C | C | T | C | C | C | C | C | ||
ss135513197 | ENSMUSSNP2683634 | ENSEMBL | ENSEMBL_Sanger | f | SNP | C | T | |||||||||||||
ss320841252 | CHEV_3_95755315 | CHEVERUD | SCREENING_POP | f | SNP | T | C | |||||||||||||
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
NOD/ShiLtJ |
NZW/LacJ |
SM/J |
WSB/EiJ |
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rs30939198 | SNP | C | C | T | C | T | C | C | T | C | C | T | C | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46778186 | NES10734339 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr3:95858704 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi13530 | CpG island 13530 | within coordinates | ||||||
Gm56819 | predicted gene, 56819 | 101 bp upstream | ||||||
Gm65572 | predicted gene, 65572 | within coordinates | ||||||
Rr375411 | regulatory region 375411 | within coordinates | ||||||
Rr581095 | regulatory region 581095 | 112 bp distal | ||||||
Rr581096 | regulatory region 581096 | 54 bp distal | ||||||
Rr581097 | regulatory region 581097 | within coordinates | ||||||
Rr581098 | regulatory region 581098 | 1706 bp proximal | ||||||
Tssr30663 | transcription start site region 30663 | 306 bp downstream | ||||||
Tssr30664 | transcription start site region 30664 | 25 bp downstream | ||||||
Tssr34570 | transcription start site region 34570 | 356 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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