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rs30939198 SNP Detail
Summary
  • ID
    rs30939198
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:95858704 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TTCGG GTCTCGCAAC GTTTGCCTAA
    Y
    GATTCCCAAT TTCAGTGTTG CATCA                                      
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
NOD/ShiLtJ
NZW/LacJ
SM/J
WSB/EiJ
ss45481016 mCV25061967 ABI CRAMUS_MOUSE f SNP C C T
ss46778186 NES10734339 PERLEGEN MM_PANEL2 f SNP C C T C T C C T C C C C C
ss135513197 ENSMUSSNP2683634 ENSEMBL ENSEMBL_Sanger f SNP C T
ss320841252 CHEV_3_95755315 CHEVERUD SCREENING_POP f SNP T C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
NOD/ShiLtJ
NZW/LacJ
SM/J
WSB/EiJ
rs30939198 SNP C C T C T C C T C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss46778186 NES10734339 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:95858704 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi13530 CpG island 13530 within coordinates
Gm56819 predicted gene, 56819 101 bp upstream
Gm65572 predicted gene, 65572 within coordinates
Rr375411 regulatory region 375411 within coordinates
Rr581095 regulatory region 581095 112 bp distal
Rr581096 regulatory region 581096 54 bp distal
Rr581097 regulatory region 581097 within coordinates
Rr581098 regulatory region 581098 1706 bp proximal
Tssr30663 transcription start site region 30663 306 bp downstream
Tssr30664 transcription start site region 30664 25 bp downstream
Tssr34570 transcription start site region 34570 356 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory