rs30938980 SNP Detail

Summary

• ID
  rs30938980
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138517940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCCATCA TGGATGGCCT
  ACTGTGATTA ATGCACGCCT AGGTTATTTT CATTAAAAAG TAAAATGTGT TCGTTCCTAT
  TGTAACAAGA AAGGCTAAGT ATTAGGGGCA GAGGAAGGAC GGAGTGCAGG TAACCGACGA
  CGTGAGTTAT AAAAGAGGAT TCAAAGCTAA TTGCTTTGCT AGTCCTAACC CTGTGGTAGA
  Y
  TCTCTTCTTT TCAGTGGTAA GTGTATGACA TGGATTTGAT GCTGAAGTCT TAATAACACT
  GGAAAAGTCG ATCGTGCCTA TAAGTCTTGA GACAAAGAAG AAAGCAATAC TTTCTGATGT
  TTTTTTAAAT CCTCTTGTAA ATGATGTGAG CATAAAGAAG GTGATAAAAC ACTGCAGCCC
  TTCTGAGACG GAGAGGAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss47000530	NES10877807	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs30938980					SNP	T	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47000530	NES10877807	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138517940 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586203	regulatory region 586203			1149 bp proximal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant
Tssr32013	transcription start site region 32013			1339 bp upstream