rs30919679 SNP Detail

Summary

• ID
  rs30919679
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:151948132 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CCACC TCCCCAGCCT TCAGCGTTCA
  Y
  TTCTTTGTTG TAACAAACAC AGTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46457962	mCV25389754	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss148077984	ENSMUSSNP4135912	ENSEMBL	ENSEMBL_Sanger	r	SNP		G	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30919679					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151948132 () rs orientation: reverse

Symbol	Name	Function Class
9230110K08Rik	RIKEN cDNA 9230110K08 gene	364 bp downstream
Camta1	calmodulin binding transcription activator 1	1907 bp upstream
Cpgi15375	CpG island 15375	730 bp distal
Gm42357	predicted gene, 42357	within coordinates
Gm57065	predicted gene, 57065	125 bp downstream
Rr398891	regulatory region 398891	1643 bp downstream
Rr605651	regulatory region 605651	1940 bp distal
Rr605653	regulatory region 605653	1435 bp distal
Rr605654	regulatory region 605654	1869 bp distal
Rr605655	regulatory region 605655	390 bp distal
Tssr40478	transcription start site region 40478	1456 bp downstream
Tssr40479	transcription start site region 40479	1420 bp downstream
Tssr40480	transcription start site region 40480	1004 bp downstream
Tssr44794	transcription start site region 44794	1996 bp upstream
Tssr44795	transcription start site region 44795	1914 bp upstream
Tssr44796	transcription start site region 44796	1902 bp upstream