AGGAC AGAACTGCAA ATCGAGCACT S GTTCCGGAGC TAGCGAAGGC GGATG S = C/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
CAST/EiJ |
DBA/2J |
FVB/NJ |
LG/J |
MOLF/EiJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss45479956 | mCV25061956 | ABI | CRAMUS_MOUSE | f | SNP | G | G | C | |||||||||||
ss46778174 | NES10734331 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | C | C | C | G | C | G | C | C | G | |||
ss135513185 | ENSMUSSNP4748190 | ENSEMBL | ENSEMBL_Sanger | f | SNP | G | G | C | |||||||||||
ss320841248 | CHEV_3_95754967 | CHEVERUD | SCREENING_POP | f | SNP | C | G | ||||||||||||
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
CAST/EiJ |
DBA/2J |
FVB/NJ |
LG/J |
MOLF/EiJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
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rs30910322 | SNP | G | G | G | C | C | C | G | C | G | C | C | C | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46778174 | NES10734331 | PERLEGEN | MM_PANEL | f | SNP | C/G |
Location: Chr3:95858356 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi13530 | CpG island 13530 | within coordinates | ||||||
Gm56819 | predicted gene, 56819 | within coordinates | ||||||
Gm65572 | predicted gene, 65572 | 284 bp upstream | ||||||
Rr375411 | regulatory region 375411 | within coordinates | ||||||
Rr581095 | regulatory region 581095 | within coordinates | ||||||
Rr581096 | regulatory region 581096 | 237 bp proximal | ||||||
Rr581097 | regulatory region 581097 | 295 bp proximal | ||||||
Tssr30663 | transcription start site region 30663 | 14 bp upstream | ||||||
Tssr30664 | transcription start site region 30664 | 263 bp upstream | ||||||
Tssr34570 | transcription start site region 34570 | 8 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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