rs30904415 SNP Detail

Summary

• ID
  rs30904415
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123178209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACACTCACT TCCGATAGTT AGAGCATTGT CTGATTCTCT
  ATTTGTAATT CTCATCTCAG AATACGAGTC ATTCCTTCAG AAAGTTCTTT GAGGAACCCA
  M
  GATTTAGCAA TGAGAAATGA CAGCGCTCTA CCTTAACCAC TGAGCCACCT CTCTCTCTAG
  CCCACCTTCA CATTCTCGAG ACTGGTGTCG AAGGAAGTT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45479786	mCV23482947	ABI	CRAMUS_MOUSE	f	SNP		A	C
ss51023302	NES13907600	PERLEGEN	MM_PANEL2	f	SNP	A		C	A	A	A	C	A	C	A	A		C	A	A	C		A
ss135764287	ENSMUSSNP2599250	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C
ss320919465	CHEV_3_123087478	CHEVERUD	SCREENING_POP	f	SNP												A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30904415					SNP	A	A	C	A	A	A	C	A	C	A	A	A	C	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51023302	NES13907600	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123178209 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13777	CpG island 13777	1166 bp proximal
Mettl14	methyltransferase 14, N6-adenosine-methyltransferase subunit	Intron
Rr397990	regulatory region 397990	1192 bp upstream
Rr584510	regulatory region 584510	624 bp proximal
Rr584511	regulatory region 584511	1361 bp proximal
Tssr35499	transcription start site region 35499	1108 bp downstream
Tssr35500	transcription start site region 35500	1365 bp downstream
Tssr35501	transcription start site region 35501	1434 bp downstream