rs3090131 SNP Detail

Summary

• ID
  rs3090131
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  103
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:156268070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCTGGCG GCGGTGCTTC
  TGAGCCTGTG CTCTTGCCTC CCGGCCGGGC AGAGCGTGGA CTTCCCTTGG GCGGCCGTGG
  ACAACATGCT GGTGAGGAAA GGTGACACAG CGGTGCTCAG GTAGGGACCG CGCGCCCTCT
  CTACACTTGC CTCAGTCTGT CTTTCCGTCC CTTTCCCTCT CTGCACCTTG CTTTACACCC
  R
  GAGTGAATCC TGCTGTTGCT CACGAGCAAA AACACCACAC CTCAGGCTAG CCACGCATGA
  CCCTTCCTGG GCTTCTCGGA CCCCGGGGCA GGGGTCTGGC TGGATTAGGG AGAGAGGGAA
  AAGCGCTTTC CAAGCAGCCC GGGCTTAGGA AGTGTGGGGC TTGAAGGAGG GGCAGGTGCC
  ACTTTGGAGC CAGGTCTCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/Sv	A	AKR	BALB/cBy	C3H/He	C57BL/6	CAST/EiJ	DBA/2
ss4327030	M-08414-2	WIMOUSESNPS	MITROCHE_POP	f	SNP	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/Sv	A	AKR	BALB/cBy	C3H/He	C57BL/6	CAST/EiJ	DBA/2
rs3090131					SNP	A	A	A	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:156268070 () rs orientation: forward

Symbol	Name	Function Class
4930570G19Rik	RIKEN cDNA 4930570G19 gene	687 bp upstream
Cpgi13974	CpG island 13974	within coordinates
Negr1	neuronal growth regulator 1	Intron
Rr587959	regulatory region 587959	791 bp distal
Rr587960	regulatory region 587960	454 bp distal
Rr587961	regulatory region 587961	within coordinates
Rr587962	regulatory region 587962	307 bp distal
Tssr32476	transcription start site region 32476	564 bp downstream
Tssr32477	transcription start site region 32477	440 bp downstream
Tssr32478	transcription start site region 32478	300 bp downstream
Tssr32479	transcription start site region 32479	237 bp downstream
Tssr32480	transcription start site region 32480	238 bp upstream
Tssr32481	transcription start site region 32481	352 bp upstream
Tssr36286	transcription start site region 36286	658 bp upstream