rs30898907 SNP Detail

Summary

• ID
  rs30898907
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:4902362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTT TCTGTATCTC CAGACAATGG
  M
  TGGATTATAG GGTGTCCACA AACTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss45974741	mCV24927514	ABI	CRAMUS_MOUSE	f	SNP	A	A	C
ss132934030	ENSMUSSNP6021658	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss321728234	CHEV_6_4852362	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs30898907					SNP	A	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4902362 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17128	CpG island 17128	373 bp proximal
Ppp1r9a	protein phosphatase 1, regulatory subunit 9A	555 bp upstream
Rr626066	regulatory region 626066	122 bp proximal
Rr626067	regulatory region 626067	1022 bp proximal
Tssr54840	transcription start site region 54840	551 bp upstream
Tssr54841	transcription start site region 54841	695 bp upstream
Tssr54842	transcription start site region 54842	888 bp upstream
Tssr54843	transcription start site region 54843	936 bp upstream
Tssr54844	transcription start site region 54844	988 bp upstream
Tssr59733	transcription start site region 59733	1555 bp downstream