rs30896467 SNP Detail

Summary

• ID
  rs30896467
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137852235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTGTTTA TAGCCATAGC
  TAAAGCATTT ACAGATATAT AGTGACATTT ATTAGAGAGA GAAAGAAAAC TTGTATCATT
  CAAGTTAGAA AATCCAGATA CCCATGAACA GAAGTGGAAG GTATGTGTGA ATATGTGCTT
  TAATAAATAA TATAAAAGGA ATATTAGTAT TTGCATTGTC TCTCAGATTT AAAATGTAAC
  Y
  GTTACCTCTC ATCAGTAAGT AATTTTGGAA ATACCATTTT TCCTGGCTGC TTAGCATGAG
  TAACTAACCT ATATTATAGA AGAACCATTG GTTTACTCTC TATGCTGACA CTCAAATAAG
  TTCTCACTTT TTACAGTTAA AAATGTTAGG ATGAATAAAT TATGATGCAG CCTTTACTGT
  ACATTTCTGA CTCGCTTACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46995387	NES10872643	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30896467					SNP	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46995387	NES10872643	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137852235 () rs orientation: forward

Symbol	Name	Function Class
C230076A16Rik	RIKEN cDNA C230076A16 gene	1506 bp upstream
Rr375797	regulatory region 375797	1666 bp downstream
Rr398069	regulatory region 398069	1244 bp downstream
Rr586087	regulatory region 586087	1096 bp distal
Rr586088	regulatory region 586088	1358 bp distal
Trmt10a	tRNA methyltransferase 10A	Intron