rs30896465 SNP Detail

Summary

• ID
  rs30896465
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137851798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCACTTT CAAAGAAATC
  GAGAAGCATA GAGTAAAGCT ATTGTTTAAG TTCTGCAAAA GTGTTGTCCT CATTATTACA
  TCTCGAAGAG TAATTGTGTT GTTGTTTGTT TTTGTTTTGG CTTAGATTAT CGTTTGTTTG
  CTTAGATTAA CTAGCTAGCT CTGTAAGAAT GAAGAATCTC AGAATGTTTC TTAAGGCCAC
  R
  TGCTATTTAG CAGATTATGC TTTGTCTGAG GCAGGGACAA GTAGGCAAAC ACTTGTAAGC
  CTTGTTATTA AGAACATATT AAAGAGAAAA GATATTTCAG TGTAGTTCGC CTTCCCCCAG
  TCAGCAAGTT GAGTTCTAGC TGTTATGGAT AAAAATGTGT GTGGTTGGAT TTAAATGAAG
  ATTGATTTCG GTCAATGCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46995385	NES10872642	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30896465					SNP	A	A	A	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46995385	NES10872642	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137851798 () rs orientation: forward

Symbol	Name	Function Class
C230076A16Rik	RIKEN cDNA C230076A16 gene	1069 bp upstream
Cpgi13871	CpG island 13871	1848 bp distal
Rr375797	regulatory region 375797	1229 bp downstream
Rr398069	regulatory region 398069	807 bp downstream
Rr586087	regulatory region 586087	659 bp distal
Rr586088	regulatory region 586088	921 bp distal
Trmt10a	tRNA methyltransferase 10A	Intron