rs30895653 SNP Detail

Summary

• ID
  rs30895653
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137851639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATGCTTT TTTTCATAGG
  AATTTAGTAC TAGAGACCAG AGGAGTTAGT AACTTTGAAA TTACTCTCTT CATTTTCTTT
  TAGACTCCTA TGAAATCCCT TATCTACTCA GTTATCCTCT CAGTTTGGAA TAAGTCAACT
  GAGTTTCAAG TAACGTGACA CTGCACTTTC AAAGAAATCG AGAAGCATAG AGTAAAGCTA
  Y
  TGTTTAAGTT CTGCAAAAGT GTTGTCCTCA TTATTACATC TCGAAGAGTA ATTGTGTTGT
  TGTTTGTTTT TGTTTTGGCT TAGATTATCG TTTGTTTGCT TAGATTAACT AGCTAGCTCT
  GTAAGAATGA AGAATCTCAG AATGTTTCTT AAGGCCACAT GCTATTTAGC AGATTATGCT
  TTGTCTGAGG CAGGGACAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46995383	NES10872641	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30895653					SNP	T	T	T	T	T	C	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46995383	NES10872641	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137851639 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
C230076A16Rik	RIKEN cDNA C230076A16 gene			910 bp upstream
Cpgi13871	CpG island 13871			1689 bp distal
Rr375797	regulatory region 375797			1070 bp downstream
Rr398069	regulatory region 398069			648 bp downstream
Rr586087	regulatory region 586087			500 bp distal
Rr586088	regulatory region 586088			762 bp distal
Trmt10a	tRNA methyltransferase 10A			Intron
				mRNA-UTR
				Splice-Site
Tssr31947	transcription start site region 31947			1992 bp downstream
Tssr31948	transcription start site region 31948			1959 bp downstream
Tssr31949	transcription start site region 31949			1941 bp downstream