rs30895651 SNP Detail

Summary

• ID
  rs30895651
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137850985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCAAAGAT GTTACTATTC
  TGTGATAGGT CAAGTTAAAT TTAACTGGAG ACATTTTAGA TGTGAAAGAC AAAGGCTCCC
  CCTGGTGTCA GAGAGCTGTA AAACACGGCT TTTGTAATTC TCACAGTTAA GGCAGCTCAA
  CACTTCAAAA TTTTGAACAT AGAGAAACTA CTGAAAAGTA TTGCCACGGA TAAATATTGC
  Y
  TTGTTTCATA GGAATTTAGT ACTAGAGACC AGAGGAGTTA GTAACTTTGA AATTACTCTC
  TTCGTTTTCT TTTAGAATTC TATGAAATCC CATATCTACT CAAGTTATCC TCTCGGTTTG
  GAATAAGTCA ACTGAGTTTC AAGTTTCAGA GCTGTGCTCT CTTGAAAATA TGTTTCATAA
  AATGTTTTCC TGTTAATTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46995381	NES10872640	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30895651					SNP	T	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46995381	NES10872640	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137850985 () rs orientation: forward

Symbol	Name	Function Class
C230076A16Rik	RIKEN cDNA C230076A16 gene	256 bp upstream
Mttp	microsomal triglyceride transfer protein	1806 bp upstream
Rr375797	regulatory region 375797	416 bp downstream
Rr398069	regulatory region 398069	within coordinates
Rr586084	regulatory region 586084	1847 bp distal
Rr586085	regulatory region 586085	1697 bp distal
Rr586086	regulatory region 586086	1817 bp distal
Rr586087	regulatory region 586087	within coordinates
Rr586088	regulatory region 586088	108 bp distal
Trmt10a	tRNA methyltransferase 10A	Intron
Tssr31944	transcription start site region 31944	1747 bp downstream
Tssr31945	transcription start site region 31945	1728 bp downstream
Tssr31946	transcription start site region 31946	1381 bp downstream
Tssr31947	transcription start site region 31947	1338 bp downstream
Tssr31948	transcription start site region 31948	1305 bp downstream
Tssr31949	transcription start site region 31949	1287 bp downstream
Tssr35880	transcription start site region 35880	1828 bp upstream
Tssr35881	transcription start site region 35881	1511 bp upstream
Tssr35882	transcription start site region 35882	1492 bp upstream