rs30895649 SNP Detail

Summary

• ID
  rs30895649
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137850962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGGACAAG CTCACGATAG
  GCTGCTCAAA GATGTTACTA TTCTGTGATA GGTCAAGTTA AATTTAACTG GAGACATTTT
  AGATGTGAAA GACAAAGGCT CCCCCTGGTG TCAGAGAGCT GTAAAACACG GCTTTTGTAA
  TTCTCACAGT TAAGGCAGCT CAACACTTCA AAATTTTGAA CATAGAGAAA CTACTGAAAA
  R
  TATTGCCACG GATAAATATT GCTTTGTTTC ATAGGAATTT AGTACTAGAG ACCAGAGGAG
  TTAGTAACTT TGAAATTACT CTCTTCGTTT TCTTTTAGAA TTCTATGAAA TCCCATATCT
  ACTCAAGTTA TCCTCTCGGT TTGGAATAAG TCAACTGAGT TTCAAGTTTC AGAGCTGTGC
  TCTCTTGAAA ATATGTTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46995379	NES10872639	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30895649					SNP	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46995379	NES10872639	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137850962 () rs orientation: forward

Symbol	Name	Function Class
C230076A16Rik	RIKEN cDNA C230076A16 gene	233 bp upstream
Cpgi13871	CpG island 13871	1012 bp distal
Mttp	microsomal triglyceride transfer protein	1783 bp upstream
Rr375797	regulatory region 375797	393 bp downstream
Rr398069	regulatory region 398069	within coordinates
Rr586084	regulatory region 586084	1824 bp distal
Rr586085	regulatory region 586085	1674 bp distal
Rr586086	regulatory region 586086	1794 bp distal
Rr586087	regulatory region 586087	within coordinates
Rr586088	regulatory region 586088	85 bp distal
Trmt10a	tRNA methyltransferase 10A	Intron
Tssr31944	transcription start site region 31944	1724 bp downstream
Tssr31945	transcription start site region 31945	1705 bp downstream
Tssr31946	transcription start site region 31946	1358 bp downstream
Tssr31947	transcription start site region 31947	1315 bp downstream
Tssr31948	transcription start site region 31948	1282 bp downstream
Tssr31949	transcription start site region 31949	1264 bp downstream
Tssr35880	transcription start site region 35880	1805 bp upstream
Tssr35881	transcription start site region 35881	1488 bp upstream
Tssr35882	transcription start site region 35882	1469 bp upstream