rs30894913 SNP Detail

Summary

• ID
  rs30894913
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137850539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAGATATG CTAAAGTAAA
  GTCTCAGAGT TGTTTTATCT TTCTGTAAAA TGTTCTTAAA TACTTGTTAG ACTTGGATTA
  GTGGATTAAA ATGTGCTTTA AGCATCACTG CTGGTCTGGG AGAAGCCTCA GACTCGCTGC
  CATAGAGATT CACCTCGTGA CCCAAACTAA AGCCGTGTGT TCAAAAGTGC CGTGTTTTAC
  R
  TAATGCATCA AATTCTTACT CTATTACTTA GTAGACAGTC GGAGCGGAAG CTATCTTGGT
  GAAGTCTAGA CAAAACAAGA CAGCCAGCTA GTATTTTATC TGCATTCATG TATTTTATAA
  AATGAAACAT ATTTCATGTG TTGTTCAGTA GTCTGGCTTA TTTAATCAAA GCTTAGGAAA
  CACCCAGTAC AGTGTTTCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46995373	NES10872635	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30894913					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46995373	NES10872635	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137850539 () rs orientation: forward

Symbol	Name	Function Class
C230076A16Rik	RIKEN cDNA C230076A16 gene	within coordinates
Cpgi13871	CpG island 13871	589 bp distal
Mttp	microsomal triglyceride transfer protein	1360 bp upstream
Rr375797	regulatory region 375797	within coordinates
Rr398069	regulatory region 398069	151 bp upstream
Rr586084	regulatory region 586084	1401 bp distal
Rr586085	regulatory region 586085	1251 bp distal
Rr586086	regulatory region 586086	1371 bp distal
Rr586087	regulatory region 586087	within coordinates
Rr586088	regulatory region 586088	317 bp proximal
Trmt10a	tRNA methyltransferase 10A	Intron
Tssr31944	transcription start site region 31944	1301 bp downstream
Tssr31945	transcription start site region 31945	1282 bp downstream
Tssr31946	transcription start site region 31946	935 bp downstream
Tssr31947	transcription start site region 31947	892 bp downstream
Tssr31948	transcription start site region 31948	859 bp downstream
Tssr31949	transcription start site region 31949	841 bp downstream
Tssr35880	transcription start site region 35880	1382 bp upstream
Tssr35881	transcription start site region 35881	1065 bp upstream
Tssr35882	transcription start site region 35882	1046 bp upstream