rs30894909 SNP Detail

Summary

• ID
  rs30894909
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137850067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGATGAGG TTAAGATGGA
  CGCGTTACCG GTTGCCACTG AAATATTTTG TGTTTAAAAT GTGGTTGCGT GTCCGGAGAT
  GTAAAATTAC TCATTTAAAA AAAAAAAAAA AAAAAAGCTC TCCTGAGATT CCCTCCCAAG
  CCAGAACTCA AGCCAAAGGG ACTTTGACAA CTGAACAAAG GGCTATTGCT ACTGCGGTAC
  W
  GACCAACGCG TTTAAAAATA AAAAAAAATA AAATAACATA AAAATACCCT GAAGTAGGCA
  TGTATTGATT TTAGAGTTAC CGAAAAGAAA GCTTAAAGAC TACGAGGGCC GTTTTAGTCG
  ATTTGATAAC AGCCGGGTTT TTGTCTTTGG CATTAAGTGA CGTATGCTCT TCCCCACACC
  AGATAGTCTT TGTCAGTATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46995369	NES10872631	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30894909					SNP	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46995369	NES10872631	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137850067 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
C230076A16Rik	RIKEN cDNA C230076A16 gene			within coordinates
Cpgi13871	CpG island 13871			117 bp distal
Mttp	microsomal triglyceride transfer protein			888 bp upstream
Rr375797	regulatory region 375797			within coordinates
Rr398069	regulatory region 398069			623 bp upstream
Rr586084	regulatory region 586084			929 bp distal
Rr586085	regulatory region 586085			779 bp distal
Rr586086	regulatory region 586086			899 bp distal
Rr586087	regulatory region 586087			within coordinates
Rr586088	regulatory region 586088			789 bp proximal
Trmt10a	tRNA methyltransferase 10A			Intron
				Splice-Site
Tssr31944	transcription start site region 31944			829 bp downstream
Tssr31945	transcription start site region 31945			810 bp downstream
Tssr31946	transcription start site region 31946			463 bp downstream
Tssr31947	transcription start site region 31947			420 bp downstream
Tssr31948	transcription start site region 31948			387 bp downstream
Tssr31949	transcription start site region 31949			369 bp downstream
Tssr35880	transcription start site region 35880			910 bp upstream
Tssr35881	transcription start site region 35881			593 bp upstream
Tssr35882	transcription start site region 35882			574 bp upstream