rs30894071 SNP Detail

Summary

• ID
  rs30894071
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137849593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGGTATCC TTTCGGATGC
  CAAAGGAGCG TGAGCTACCC TAGCCTCCGC TGCAACCAAG GCTTCCGGAG TAGAGGGTGA
  GGGCCTGGGA AGTAGTTGCC GGTTTGCGGA GGAAGTGGCG TCAGGTGTGC GTTTTCCACG
  CCCCTCGCCA CTCACGTGCC GTCTTCCAGA GTCGTGATTG GTCAGCTGCG GTTCGTTCGC
  K
  GGCGCAGGGC CCCGCTCGGG GCGTGCGCGC GCCCGGTTGT CGCCGCGGTG TGCGCTCCGG
  GTTTCTGTTG TTTAGGAGAG TCCCTACCGG AAGTGTGGCA GAAAGGAGCC ATGTGGAGTC
  TCAGGGTAGC TTGTCGCAAC GCTGCGTTGC GCCTAGAGGG CAGGCGAGCC GTTTTCCCTT
  CTTTTCCTCT TTTTCCTTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46995361	NES10872623	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs30894071					SNP	G	G	G	G	G	T	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46995361	NES10872623	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137849593 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
C230076A16Rik	RIKEN cDNA C230076A16 gene			within coordinates
Cpgi13871	CpG island 13871			within coordinates
Mttp	microsomal triglyceride transfer protein			414 bp upstream
Rr375797	regulatory region 375797			within coordinates
Rr398069	regulatory region 398069			1097 bp upstream
Rr586084	regulatory region 586084			455 bp distal
Rr586085	regulatory region 586085			305 bp distal
Rr586086	regulatory region 586086			425 bp distal
Rr586087	regulatory region 586087			within coordinates
Rr586088	regulatory region 586088			1263 bp proximal
Trmt10a	tRNA methyltransferase 10A			Intron
				mRNA-UTR
Tssr31944	transcription start site region 31944			355 bp downstream
Tssr31945	transcription start site region 31945			336 bp downstream
Tssr31946	transcription start site region 31946			within coordinates
Tssr31947	transcription start site region 31947			14 bp upstream
Tssr31948	transcription start site region 31948			56 bp upstream
Tssr31949	transcription start site region 31949			90 bp upstream
Tssr35880	transcription start site region 35880			436 bp upstream
Tssr35881	transcription start site region 35881			119 bp upstream
Tssr35882	transcription start site region 35882			100 bp upstream