rs30894069 SNP Detail

Summary

• ID
  rs30894069
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137849559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTC GCCACTCACG TGCCGTCTTC
  Y
  AGAGTCGTGA TTGGTCAGCT GCGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46995359	NES10872621	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T		C	T	T	C		T
ss135949207	ENSMUSSNP5739349	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					T
ss320978586	CHEV_3_137806762	CHEVERUD	SCREENING_POP	f	SNP										T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30894069					SNP	T	T	T	T	T	C	T	T	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46995359	NES10872621	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137849559 () rs orientation: forward

Symbol	Name	Function Class
C230076A16Rik	RIKEN cDNA C230076A16 gene	within coordinates
Mttp	microsomal triglyceride transfer protein	380 bp upstream
Rr375797	regulatory region 375797	within coordinates
Rr398069	regulatory region 398069	1131 bp upstream
Rr586084	regulatory region 586084	421 bp distal
Rr586085	regulatory region 586085	271 bp distal
Rr586086	regulatory region 586086	391 bp distal
Rr586087	regulatory region 586087	within coordinates
Rr586088	regulatory region 586088	1297 bp proximal
Trmt10a	tRNA methyltransferase 10A	Intron
Tssr31944	transcription start site region 31944	321 bp downstream
Tssr31945	transcription start site region 31945	302 bp downstream
Tssr31946	transcription start site region 31946	24 bp upstream
Tssr31947	transcription start site region 31947	48 bp upstream
Tssr31948	transcription start site region 31948	90 bp upstream
Tssr31949	transcription start site region 31949	124 bp upstream
Tssr35880	transcription start site region 35880	402 bp upstream
Tssr35881	transcription start site region 35881	85 bp upstream
Tssr35882	transcription start site region 35882	66 bp upstream