rs30893209 SNP Detail

Summary

• ID
  rs30893209
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137849284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCTTGACC GGGAAAAACG
  CCTCGCGGTA GCCACTAACC ATTCCCGCAA AACCCAGGCC CAGACCCCGC CCCCTACAGG
  CTCCTCCTCT TTCTCCGGTT TGGAGTTAGC GCAGTCCGAT GACGTAAGCC GTAAGTGCCG
  TAACCGGGCG CGCAACCACC GCCTCTGCCT CTGGGAGTTG AAGTTTCTGA AGGAGGACGA
  M
  CGCGTGGAGC CGAGAACACT TCAGAAAGGC TTTCTAACCG CACCCCGGCG TTCCCCACCG
  GCCCCGCGGC ACGGTAAATA TGGCACTGCG GCTGTCGTGC CCCTGCCCGT TGGTATCCTT
  TCGGATGCCA AAGGAGCGTG AGCTACCCTA GCCTCCGCTG CAACCAAGGC TTCCGGAGTA
  GAGGGTGAGG GCCTGGGAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46995349	NES10872611	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30893209					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46995349	NES10872611	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137849284 () rs orientation: forward

Symbol	Name	Function Class
C230076A16Rik	RIKEN cDNA C230076A16 gene	within coordinates
Cpgi13871	CpG island 13871	within coordinates
Mttp	microsomal triglyceride transfer protein	105 bp upstream
Rr375797	regulatory region 375797	within coordinates
Rr398069	regulatory region 398069	1406 bp upstream
Rr586084	regulatory region 586084	146 bp distal
Rr586085	regulatory region 586085	within coordinates
Rr586086	regulatory region 586086	116 bp distal
Rr586087	regulatory region 586087	5 bp proximal
Rr586088	regulatory region 586088	1572 bp proximal
Trmt10a	tRNA methyltransferase 10A	mRNA-UTR
Tssr31944	transcription start site region 31944	46 bp downstream
Tssr31945	transcription start site region 31945	27 bp downstream
Tssr31946	transcription start site region 31946	299 bp upstream
Tssr31947	transcription start site region 31947	323 bp upstream
Tssr31948	transcription start site region 31948	365 bp upstream
Tssr31949	transcription start site region 31949	399 bp upstream
Tssr35880	transcription start site region 35880	127 bp upstream
Tssr35881	transcription start site region 35881	165 bp downstream
Tssr35882	transcription start site region 35882	194 bp downstream