rs30890605 SNP Detail

Summary

• ID
  rs30890605
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:76751665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACAGAGT GATGGGAAAC
  TCTGGGGGTT CGGAAACATT AATTATTCTG ATAGAATTTA TACCTTAGGG AGGGAGTGTC
  CGTGGATTTC AAAGCAACGA GCAGCTAGCT GAATTTGAGT TTTCCCTGAT TTTTCAGAAT
  GGAGGCTCCT TCCTTTCAGC TGACAGAGTC AGCAGCTGTC ATAGGACAGG TTGCCTTGGT
  R
  CGCCATGCTT CAGCAGTTTG TAGATAGATG CTAAGTGTCA GTTGAATGTC TGGGGAAGGG
  AACTGAAGGA CCACTACCAA GACTTGTTTA AAAAAAAAAA TCTGGGCACC TAAAACAGAA
  AACTTTCATG CACAAAACCC AAAACTTAGG TTTCTTAGCC AAGGCTCTTT TTTTTTTTTT
  TTTTTTTTTT TGCTGTGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ
ss39232332	mCV23494529	ABI	CRAMUS_MOUSE	f	SNP		G	A		G		G
ss49233186	NES12520059	PERLEGEN	MM_PANEL2	f	SNP	G		A	A		G		G
ss139757431	ENSMUSSNP1842074	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ
rs30890605					SNP	G	G	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49233186	NES12520059	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:76751665 () rs orientation: forward

Symbol	Name	Function Class
4930444M15Rik	RIKEN cDNA 4930444M15 gene	333 bp downstream
E130202H07Rik	RIKEN cDNA E130202H07 gene	1533 bp upstream
Gm63554	predicted gene, 63554	within coordinates
Rr389872	regulatory region 389872	635 bp upstream
Rr495676	regulatory region 495676	565 bp distal
Rr495677	regulatory region 495677	within coordinates
Tssr126731	transcription start site region 126731	1717 bp upstream
Tssr126732	transcription start site region 126732	1751 bp upstream
Tssr129811	transcription start site region 129811	1260 bp downstream
Tssr129812	transcription start site region 129812	1295 bp downstream