rs30879289 SNP Detail

Summary

• ID
  rs30879289
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:137720934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGTTTAG ATATTCCTGG
  AATCAACGTG TCCAGGTCAT AGCTCAGCAC ATTCCCTCCA AAGCCTGACC TATCTTTCTT
  TTTCCATCTG AGCCAATGAC TCCAGTTCCC ACTGGTTAAA CAAACCCCAG CAGAGGGCTA
  GCTCCTCATT TCTTCTTCAC TGAGATAGTT ACCAGGTCTA ACAGATCACA TCTAGTGATT
  K
  CACGTTCTCT TCTATTCTCT CCTATGCTTA GTCCCATACC CTAAACTCAG GCCTCCATTG
  TTATGAATCT AGGCTATTCT TAGGAGAAAA GCAGAGACAG AAAGTGGGGG TTACACTGTC
  CTCTCAACTT AGGAGGAAAA TATCTACAAA TCAGAGCTAG ACACTCAGAC CATCACCTCA
  GTCACTCAAC TGTGGTCCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45545143	mCV23058242	ABI	CRAMUS_MOUSE	f	SNP		G					T		T
ss46993421	NES10878412	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	G	T	G		G	T	T		T	T	T	T		T
ss135946723	ENSMUSSNP4709041	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							T
ss320977715	CHEV_3_137678137	CHEVERUD	SCREENING_POP	f	SNP											G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30879289					SNP	T	G	T	G	T	G	T	G	T	T	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46993421	NES10878412	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137720934 () rs orientation: forward

Symbol	Name	Function Class
Gm19708	predicted gene, 19708	within coordinates
Rr398067	regulatory region 398067	1929 bp upstream
Rr586058	regulatory region 586058	within coordinates
Rr586059	regulatory region 586059	1550 bp proximal