rs30872740 SNP Detail

Summary

• ID
  rs30872740
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:137721200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTAGGCT ATTCTTAGGA
  GAAAAGCAGA GACAGAAAGT GGGGGTTACA CTGTCCTCTC AACTTAGGAG GAAAATATCT
  ACAAATCAGA GCTAGACACT CAGACCATCA CCTCAGTCAC TCAACTGTGG TCCTTCATTC
  TCCATCCAAG ACAGATGAAG AGCAGGTATC TTACCCTTGG AATCAATACC AAATTGTCCA
  Y
  AGTTAACTCC ACTGTGTAGA GCGATAGAAG ACAGCTATGT CTACGGACTA ACATGGCTGG
  ATCTAATAAT GTTGCATGGT TAAGTGAAAG TTTTTCTGGC CTCACCTGTA GGCATCCTCT
  GGCAGGTATG TCCAATCTGT GGCCCATTGG CTGCATGGGG CTGTGCGCAG CCTAGGACAA
  AATCATAAAC TCACACACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45552490	mCV23058252	ABI	CRAMUS_MOUSE	f	SNP		T					C		C
ss46993431	NES10878422	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	T		C	C	C	C		C	C	C	C		C
ss135946735	ENSMUSSNP3574088	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
ss320977719	CHEV_3_137678403	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30872740					SNP	C	T	C	T	C	T	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46993431	NES10878422	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137721200 () rs orientation: forward

Symbol	Name	Function Class
Gm19708	predicted gene, 19708	within coordinates
Rr398067	regulatory region 398067	1663 bp upstream
Rr586058	regulatory region 586058	194 bp distal
Rr586059	regulatory region 586059	1284 bp proximal