rs30864860 SNP Detail

Summary

• ID
  rs30864860
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:120680291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCAGCTCA CCCACCACCA
  CCCCCCTCTG TCACCCAACC CGGGCCTTGC AACAGACGAA TTGTAACTTG CCTTCTGCTT
  CGCCTCCAGC TTCTGCAAAA TACAGTGACT TCCACGGGCT CTCTTCCAGA CAGTCCTGTG
  GGATCTCACA CCCACCTTCA TCAAGCCGAG GGAGGGAGGG AGGGACGCCC CATCCGCAGC
  R
  CCACGAGCCG TGGTTGGGAG GCTTTAATTT GACTCTGCTT CCCTTTGCAG CTTGCGTGTC
  TCTCCCATGT CTGCCACCGC AGCAGGAGCT TAAAAGAACA GAGGAGGAGG AAGGAGCTCT
  CGTGAGAACC CCGGGAGTTT TGGCAGAACC TTTGTGGGAA CCATATGGCG GCAACTTTAC
  AGTACATGAA ACATTTTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45474814	mCV24002944	ABI	CRAMUS_MOUSE	f	SNP	G	A					A		A
ss51608894	NES14656090	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A		A	A	A	A	A	A	A	A	G
ss135709332	ENSMUSSNP5969613	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30864860					SNP	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51608894	NES14656090	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:120680291 () rs orientation: forward

Symbol	Name	Function Class
6530403H02Rik	RIKEN cDNA 6530403H02 gene	within coordinates
Rr583992	regulatory region 583992	81 bp distal
Rr583993	regulatory region 583993	within coordinates
Tssr35394	transcription start site region 35394	86 bp downstream