rs30860202 SNP Detail

Summary

• ID
  rs30860202
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90519112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTCCTATG GCCCCTGCCC TTCTCTTTCT CCCAGATGGA
  TCCTTCCAGC AGAGAAATAA AGCCTTATCC ATTACACGCA CTGGTTTTAA GGTGGTTTGT
  S
  TCTTGGCTGA GGCAGGGGAG AACAGACATT TTGGACCACT AAGCCTTGGG CCACACACAG
  GTGGTCTGTG GATAGCAGGA GCTGGGCTCT CATCCCTCT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45473877	mCV24985136	ABI	CRAMUS_MOUSE	f	SNP		G	G					G		C
ss60424283	NES15923534	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		C	C	G	C		C	G	G	C		C
ss135477175	ENSMUSSNP1695009	ENSEMBL	ENSEMBL_Sanger	f	SNP			G							C
ss320838144	CHEV_3_90415727	CHEVERUD	SCREENING_POP	f	SNP													G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30860202					SNP	G	G	G	G	G	G	G	G	C	C	G	C	G	C	G	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424283	NES15923534	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90519112 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13468	CpG island 13468	1181 bp proximal
Gm57853	predicted gene, 57853	1379 bp upstream
Rr580416	regulatory region 580416	315 bp proximal
Rr580417	regulatory region 580417	872 bp proximal
Rr580418	regulatory region 580418	983 bp proximal
S100a5	S100 calcium binding protein A5	25 bp downstream
S100a6	S100 calcium binding protein A6 (calcyclin)	1077 bp upstream
Tssr30242	transcription start site region 30242	467 bp upstream
Tssr30243	transcription start site region 30243	1027 bp upstream
Tssr30244	transcription start site region 30244	1064 bp upstream
Tssr30245	transcription start site region 30245	1095 bp upstream
Tssr30246	transcription start site region 30246	1341 bp upstream
Tssr30247	transcription start site region 30247	1371 bp upstream
Tssr30248	transcription start site region 30248	1477 bp upstream
Tssr30249	transcription start site region 30249	1714 bp upstream
Tssr30250	transcription start site region 30250	1923 bp upstream
Tssr30251	transcription start site region 30251	1970 bp upstream