rs30857436 SNP Detail

Summary

• ID
  rs30857436
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79475835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGAGCAC AACTATGGAG
  GTTTTTGTTC TTTGGAAAGA AAAGCCCTTG AACTTGGTCC TCATTTTATC GGGTCCAGGA
  CTCCCTAGCA GAAAACGTGG CCTGAGCTGG AGAAGCAACT TTAGTGCCTG ACGTTGCTGC
  TGGGGATTCT GGCCCCTGCT GCATTTGAGG TCCCAGCAAG CAACTGCCGG AACCAGAGTA
  W
  ATCAGCAGGC TCAATTTTGA ATTTACAAAC AGTTTATTCA GGTCACCGGG TTTTGTTTTG
  GTTTTTTTTG TTTTTTGGGG TTTTTTTGGG TTTTTTGGTG TGTTGGTTCC CACTGGTACA
  TAAGTCACAC AAAAGCTGTG CATGTACTAA GCCCATATGT GCGTGCGTTA AGCCCACATA
  TACACACAAA TGATTGCTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss45473629	mCV23100291	ABI	CRAMUS_MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs30857436					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79475835 () rs orientation: forward

Symbol	Name	Function Class
4930589L23Rik	RIKEN cDNA 4930589L23 gene	within coordinates
Cpgi13275	CpG island 13275	266 bp distal
Fnip2	folliculin interacting protein 2	732 bp upstream
Gm64946	predicted gene, 64946	1760 bp downstream
Rr578548	regulatory region 578548	857 bp distal
Rr578549	regulatory region 578549	351 bp distal
Rr578550	regulatory region 578550	within coordinates
Rr578551	regulatory region 578551	680 bp proximal
Tssr29585	transcription start site region 29585	216 bp downstream
Tssr33723	transcription start site region 33723	1153 bp upstream
Tssr33724	transcription start site region 33724	834 bp upstream
Tssr33725	transcription start site region 33725	764 bp upstream
Tssr33726	transcription start site region 33726	738 bp upstream
Tssr33727	transcription start site region 33727	665 bp upstream
Tssr33728	transcription start site region 33728	374 bp upstream