rs30854108 SNP Detail

Summary

• ID
  rs30854108
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17108787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATATATAT GTAATTTCCA
  CTGATGGAAT CCCAGTCGCT CAGGTGTCCT GTTGGCCTTC ACATTTGGGA CATTTTTAAC
  AATTTTTTTT GTTTTTAACT TCTTATTGTA TATGAATTAT ACACCATGCA CCCCCAATCC
  CACTCATCTC GTCACCCCTT TACAGCATCT ATATCTCAAG TCCTGGGGTA TCTTCTCCAT
  Y
  CTTGCAACCT CCCCTCAAAA AATAGAAATA AAAATAAAAA AATTAAAACC TCAAAATCAA
  AACAAAACAA AACAAACAAC AACAAAAATC TCACTGTGGA AGCTGCAGTG TGTCACAATG
  TGTCACACGG GTATTCCTTT GGCCAAACCT CTTTACTTCC AAATGTTCAT TGCAATGAGT
  CTGGTTTGAG GCCTCTGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45971242	mCV24739076	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss133009940	ENSMUSSNP3347017	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30854108					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17108787 () rs orientation: forward

Symbol	Name	Function Class
Gm4876	predicted gene 4876	within coordinates
Gm53251	predicted gene, 53251	within coordinates
Rr626766	regulatory region 626766	313 bp proximal
Rr626767	regulatory region 626767	1892 bp proximal