rs30851978 SNP Detail

Summary

• ID
  rs30851978
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138558043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAC AAGGCCTGCC TTTTACAGCA
  Y
  GAAGTGACTT TTCATGTGTT TTGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss45472436	mCV23602373	ABI	CRAMUS_MOUSE	f	SNP	C	C	T				T
ss47001028	NES10875945	PERLEGEN	MM_PANEL2	f	SNP			T	C	T	T		C	T	C		C	C	C
ss135957690	ENSMUSSNP4864483	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss320981663	CHEV_3_138515246	CHEVERUD	SCREENING_POP	f	SNP											C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs30851978					SNP	C	C	T	C	T	T	T	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47001028	NES10875945	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138558043 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr398073	regulatory region 398073			1737 bp upstream
Rr586211	regulatory region 586211			1816 bp distal
Rr586212	regulatory region 586212			within coordinates
Rr586213	regulatory region 586213			834 bp proximal
Rr586214	regulatory region 586214			1600 bp proximal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant