rs30820002 SNP Detail

Summary

• ID
  rs30820002
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:151947754 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AATAC AAAACATTCT TTTGGGACAT
  M
  TTTATTTTTG GAACAACCTA AGCAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46446878	mCV25389762	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	C	C
ss148077969	ENSMUSSNP1632917	ENSEMBL	ENSEMBL_Sanger	r	SNP		T	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30820002					SNP	A	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151947754 () rs orientation: reverse

Symbol	Name	Function Class
9230110K08Rik	RIKEN cDNA 9230110K08 gene	within coordinates
Camta1	calmodulin binding transcription activator 1	1529 bp upstream
Cpgi15375	CpG island 15375	352 bp distal
Gm42357	predicted gene, 42357	within coordinates
Gm57065	predicted gene, 57065	within coordinates
Rr398891	regulatory region 398891	1265 bp downstream
Rr605651	regulatory region 605651	1562 bp distal
Rr605653	regulatory region 605653	1057 bp distal
Rr605654	regulatory region 605654	1491 bp distal
Rr605655	regulatory region 605655	12 bp distal
Tssr40478	transcription start site region 40478	1078 bp downstream
Tssr40479	transcription start site region 40479	1042 bp downstream
Tssr40480	transcription start site region 40480	626 bp downstream
Tssr44794	transcription start site region 44794	1618 bp upstream
Tssr44795	transcription start site region 44795	1536 bp upstream
Tssr44796	transcription start site region 44796	1524 bp upstream