rs30811455 SNP Detail

Summary

• ID
  rs30811455
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19948474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAAGGTTC CATATTTACC
  AATGTATTAA CAGAACTAGA GTAAAACACT TATCAAAGTA AATGACAGTA AACAGTAAAT
  TGAGACAGGT ATAATGCGGC CTTAGATTCC CAAGCCACCA CAAGTATTGA ATTAAAAACG
  GATAGCCAGT TTTCACTGGT ATCTTAGCCT TCCTTAACGT ACACATTTAA AACAGTCCTG
  R
  ATGAGGAGTA CTATTAGAGT CACCACCTTA CACGATTTTT CAATCTTAAC TAAGTATCTC
  AGGATCAAAT AGTGGCACAG CCGTAACTGG AACCTAAGCT TGCAACCACC CAGCACAGCC
  GAGAAGCCTG CCCTAAGTCG CAAAACAATC AATCTTTAAG TGTATCCGTG GAATCGCTCA
  CTCCTAGGGC GCAAAGACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45468576	mCV24778441	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					G	G
ss46827229	NES10869375	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	A		G	G	G		G	G	G	G		A
ss134671201	ENSMUSSNP2989822	ENSEMBL	ENSEMBL_Sanger	f	SNP			A
ss320680118	CHEV_3_19794310	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30811455					SNP	G	G	A	G	G	G	A	G	G	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46827229	NES10869375	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19948474 () rs orientation: forward

Symbol	Name	Function Class
4632415L05Rik	RIKEN cDNA 4632415L05 gene	672 bp upstream
Cpgi13006	CpG island 13006	248 bp proximal
Gm64742	predicted gene, 64742	546 bp upstream
Rr574033	regulatory region 574033	56 bp proximal
Rr574034	regulatory region 574034	487 bp proximal
Rr574035	regulatory region 574035	557 bp proximal
Rr574036	regulatory region 574036	713 bp proximal
Rr574037	regulatory region 574037	724 bp proximal
Tssr28531	transcription start site region 28531	545 bp upstream
Tssr28532	transcription start site region 28532	593 bp upstream
Tssr28533	transcription start site region 28533	786 bp upstream