rs30808054 SNP Detail

Summary

• ID
  rs30808054
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:120681169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACTTGGCT GGCTGTCTCA
  CTCTAAAGTC ACACAAGCCA GTTTGTCATC AGCGCGGCCA TGACTAACCA GGCAGCACAC
  GGCTCTGTGG ACTTCTCACA GAACCATCCC CACGGCCCAG GAGTCCACTA AAAACAAGGA
  GCAACACCCC TGAAGAAGGT CCCAGAGCAG AAGGCTTCCA GGGCTGGGAG AGTACCTGGG
  K
  AGGAGAGGAA GTGAAGCCAA GAGGGACAGA GTGACAGTGT GTAGGGAAAA CTCACACACT
  AAGCTCTAAG AACACATTTT CCTGCACAAC TTGGACCCTG AAGAAAAGTC CCAGGGAAGT
  CAGTCTCACT CTGTACACCT CTGTGCACTA GGATTTAGGC ACAAAAATAA TAAGAAAAAG
  TGCTGTAGAA TAGTTAAACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45467630	mCV24002647	ABI	CRAMUS_MOUSE	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30808054					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:120681169 () rs orientation: forward

Symbol	Name	Function Class
6530403H02Rik	RIKEN cDNA 6530403H02 gene	436 bp upstream
Rr583992	regulatory region 583992	959 bp distal
Rr583993	regulatory region 583993	532 bp distal
Tssr35394	transcription start site region 35394	774 bp upstream