rs30807232 SNP Detail

Summary

• ID
  rs30807232
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116457467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGTATGT TTTTGCTAGG
  CTCTTCATTT ACTCCAGTCA GGGGTTGCCG ATTGTTATGC CATAATACCA GAGGAACTAT
  GGAGAGGTGC TGCCGTTGAG CTGAAATCTC CTTCAAAGCT TTGTGGATTA TCTTGGAACG
  AGATCCTCTA TGCCTGGTCA AGCCTTGAGC TGACTGCAAA CTTTATGAGA CCTTCAGCTA
  K
  GAATACCCAG CTTAGCCACA TTACTGGGAT GGGGCTGTAG CTGGTTCTTT TGGAGTGCTT
  TTCCTGTAAG CATAGGGCTG CGGATTCTAT CACCAACAAT CAGTGAACCC AGCATAGAAG
  TGGATGCCTA GATCCTGGCA TGAAGGAGAA TCAGGAATTC AAGGACAAAT CTGAGAGCAG
  CCTGGGTGTG GGTGGATTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45467214	mCV23499225	ABI	CRAMUS_MOUSE	f	SNP	G	T	T
ss135670767	ENSMUSSNP668450	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30807232					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116457467 () rs orientation: forward

Symbol	Name	Function Class
4930512P04Rik	RIKEN cDNA 4930512P04 gene	within coordinates
Cpgi13738	CpG island 13738	790 bp distal
Gm43191	predicted gene 43191	Intron
Mfsd14a	major facilitator superfamily domain containing 14A	1203 bp upstream
Rr375625	regulatory region 375625	212 bp upstream
Rr397966	regulatory region 397966	1017 bp downstream
Rr583758	regulatory region 583758	1152 bp distal
Rr583759	regulatory region 583759	651 bp distal
Tssr35324	transcription start site region 35324	1714 bp upstream
Tssr35325	transcription start site region 35325	1479 bp upstream
Tssr35326	transcription start site region 35326	1270 bp upstream
Tssr35327	transcription start site region 35327	1248 bp upstream
Tssr35328	transcription start site region 35328	1234 bp upstream
Tssr35329	transcription start site region 35329	1177 bp upstream
Tssr35330	transcription start site region 35330	1164 bp upstream