rs30806750 SNP Detail

Summary

• ID
  rs30806750
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:82456475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTCAGAGC TGCACAAGTC ACCTCGCTGC ATTGGATCAC
  TCTTCTTGTT GTTTTCTTTT CTTTCTTTCT TTTTTAATTT ATAAAATAAG GATGGCCACA
  Y
  TAGTTCTCAG AATGTCTCTG AAGGATACAA AACAATGATT CGATTTAGAT TAGGTGTCTC
  GAAAAAAAAA AGTTATACTT AACCTATTTT TAAAAGACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss45468526	mCV24530718	ABI	CRAMUS_MOUSE	f	SNP	T	T	T			T	C
ss46716462	NES10748408	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T		C	T	T		C	T	C	C
ss135405692	ENSMUSSNP2543553	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T				C
ss320819139	CHEV_3_82353090	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30806750					SNP	T	T	T	C	T	T	C	T	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46716462	NES10748408	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:82456475 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13290	CpG island 13290	424 bp distal
Gm64983	predicted gene, 64983	within coordinates
Npy2r	neuropeptide Y receptor Y2	1084 bp upstream
Rr578785	regulatory region 578785	1219 bp distal
Rr578786	regulatory region 578786	594 bp distal
Rr578787	regulatory region 578787	868 bp proximal
Tssr33789	transcription start site region 33789	1114 bp upstream
Tssr33790	transcription start site region 33790	1066 bp upstream