rs30803070 SNP Detail

Summary

• ID
  rs30803070
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108805395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCTCCCGT GCCGCGCTCC TATTGGCTGG AAGTTCTTTC
  CCCAAAAGCC AGAGCGACCT AGGCTCGCCA CGCCAGCTAG ACCAGACTCG GAACCGCCCA
  S
  GGGGCGTGGC CCAGTGGCAG GGCGGGGCCT TGCAGTCCGG GCGGCCTATA GAGCCGGAGG
  GAGTCCCCGG CCGCGCCCCT CGAGGCCGGG CCGGTGGAG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45965046	mCV24063193	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
ss133510094	ENSMUSSNP3065912	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30803070					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108805395 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17816	CpG island 17816	within coordinates
Edem1	ER degradation enhancer, mannosidase alpha-like 1	Noncoding-Transcript-Variant
Gm35417	predicted gene, 35417	158 bp upstream
Rr399822	regulatory region 399822	650 bp downstream
Rr399823	regulatory region 399823	within coordinates
Rr636212	regulatory region 636212	1523 bp distal
Rr636213	regulatory region 636213	91 bp distal
Rr636214	regulatory region 636214	within coordinates
Rr636215	regulatory region 636215	715 bp proximal
Tssr58099	transcription start site region 58099	74 bp upstream
Tssr58100	transcription start site region 58100	92 bp upstream
Tssr58101	transcription start site region 58101	115 bp upstream
Tssr58102	transcription start site region 58102	128 bp upstream
Tssr58103	transcription start site region 58103	161 bp upstream
Tssr58104	transcription start site region 58104	171 bp upstream
Tssr58105	transcription start site region 58105	199 bp upstream
Tssr58106	transcription start site region 58106	300 bp upstream
Tssr58107	transcription start site region 58107	692 bp upstream
Tssr62395	transcription start site region 62395	50 bp upstream