rs30794634 SNP Detail

Summary

• ID
  rs30794634
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138555436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTG ACCTACCCCC CCCCATGACT
  R
  CTGCCAAGAC GGAGAGAACT GAAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45466185	mCV23602666	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss135957663	ENSMUSSNP4040675	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
ss320981652	CHEV_3_138512639	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30794634					SNP	A	G	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138555436 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586211	regulatory region 586211			4 bp proximal
Rr586212	regulatory region 586212			1805 bp proximal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant