rs30793053 SNP Detail

Summary

• ID
  rs30793053
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:7711053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGA GCTTGATATG TGGGTAAATA
  W
  AGGCGATTTT CAAGTAATGA AAAAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45465094	mCV25453646	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A
ss134560103	ENSMUSSNP4130757	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		A
ss320643335	CHEV_3_7645993	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs30793053					SNP	T	T	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7711053 () rs orientation: forward

Symbol	Name	Function Class
Gm16685	predicted gene, 16685	within coordinates
Rr573264	regulatory region 573264	1507 bp distal
Rr573265	regulatory region 573265	322 bp distal
Tssr28315	transcription start site region 28315	1386 bp downstream
Tssr28316	transcription start site region 28316	803 bp upstream
Tssr28317	transcription start site region 28317	918 bp upstream
Tssr28318	transcription start site region 28318	948 bp upstream
Tssr28319	transcription start site region 28319	1080 bp upstream
Tssr28320	transcription start site region 28320	1108 bp upstream
Tssr28321	transcription start site region 28321	1162 bp upstream