rs30769051 SNP Detail

Summary

• ID
  rs30769051
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90416035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCCTGTTTC AAACTAAGAT TATTATTATT TTTAAAGCTG
  GAGATGTTAA CTCGGGGCGC TAGTTTAGCC AAAGTACGAT TTTGGGTTCA ACTTCGGTGC
  M
  GCAAAAAAAA AAAAAAAAAA AAAAAAAAGA ATCAAAATCG AACACCCAGA GCCGCCGCTA
  ATTCCTGTAC TCCTCATTTG ACCTCCACCT CGAAGCCTC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45464535	mCV23476232	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	A
ss320837922	CHEV_3_90312650	CHEVERUD	SCREENING_POP	f	SNP						C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30769051					SNP	C	C	C	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90416035 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chtop	chromatin target of PRMT1			Intron
				Noncoding-Transcript-Variant
Cpgi13465	CpG island 13465			33 bp proximal
Gm56783	predicted gene, 56783			236 bp upstream
Rr397813	regulatory region 397813			648 bp upstream
Rr580381	regulatory region 580381			within coordinates
Rr580382	regulatory region 580382			174 bp proximal
Rr580383	regulatory region 580383			712 bp proximal
Tssr30207	transcription start site region 30207			349 bp upstream
Tssr30208	transcription start site region 30208			912 bp upstream
Tssr34236	transcription start site region 34236			665 bp upstream
Tssr34237	transcription start site region 34237			within coordinates
Tssr34238	transcription start site region 34238			728 bp downstream
Tssr34239	transcription start site region 34239			789 bp downstream