rs30755355 SNP Detail

Summary

• ID
  rs30755355
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108805572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCGC GGGGCGGGGG ACAATGGACC
  W
  GTTCCTGGTG CGTCACGAGG GAGTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45959842	mCV24063201	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
ss321894198	CHEV_6_108778605	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30755355					SNP	T	A	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108805572 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17816	CpG island 17816	within coordinates
Edem1	ER degradation enhancer, mannosidase alpha-like 1	Noncoding-Transcript-Variant
Gm35417	predicted gene, 35417	335 bp upstream
Rr399822	regulatory region 399822	827 bp downstream
Rr399823	regulatory region 399823	within coordinates
Rr636212	regulatory region 636212	1700 bp distal
Rr636213	regulatory region 636213	268 bp distal
Rr636214	regulatory region 636214	within coordinates
Rr636215	regulatory region 636215	538 bp proximal
Tssr58099	transcription start site region 58099	94 bp downstream
Tssr58100	transcription start site region 58100	69 bp downstream
Tssr58101	transcription start site region 58101	53 bp downstream
Tssr58102	transcription start site region 58102	46 bp downstream
Tssr58103	transcription start site region 58103	7 bp downstream
Tssr58104	transcription start site region 58104	within coordinates
Tssr58105	transcription start site region 58105	22 bp upstream
Tssr58106	transcription start site region 58106	123 bp upstream
Tssr58107	transcription start site region 58107	515 bp upstream
Tssr62395	transcription start site region 62395	227 bp upstream