rs30747272 SNP Detail

Summary

• ID
  rs30747272
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90519212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCTTGGCTG AGGCAGGGGA GAACAGACAT TTTGGACCAC
  TAAGCCTTGG GCCACACACA GGTGGTCTGT GGATAGCAGG AGCTGGGCTC TCATCCCTCT
  Y
  CACTGGCAGT CCTTCATCAT GGACATTGTT GGAGGTGTCC TGACTTTGTT CTGCACTCCT
  GTAAAATAAC AAAGCTGCCC AGACAGCAAA GATGCAGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45460741	mCV24985125	ABI	CRAMUS_MOUSE	f	SNP		T						T		C
ss60424281	NES15923536	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		C	C	T	C		C	T	T	C		C
ss135477181	ENSMUSSNP574309	ENSEMBL	ENSEMBL_Sanger	f	SNP		T								C
ss320838146	CHEV_3_90415827	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30747272					SNP	T	T	T	T	T	T	T	T	C	C	T	C	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424281	NES15923536	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90519212 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13468	CpG island 13468	1081 bp proximal
Gm57853	predicted gene, 57853	1279 bp upstream
Rr580416	regulatory region 580416	215 bp proximal
Rr580417	regulatory region 580417	772 bp proximal
Rr580418	regulatory region 580418	883 bp proximal
S100a5	S100 calcium binding protein A5	125 bp downstream
S100a6	S100 calcium binding protein A6 (calcyclin)	977 bp upstream
Tssr30242	transcription start site region 30242	367 bp upstream
Tssr30243	transcription start site region 30243	927 bp upstream
Tssr30244	transcription start site region 30244	964 bp upstream
Tssr30245	transcription start site region 30245	995 bp upstream
Tssr30246	transcription start site region 30246	1241 bp upstream
Tssr30247	transcription start site region 30247	1271 bp upstream
Tssr30248	transcription start site region 30248	1377 bp upstream
Tssr30249	transcription start site region 30249	1614 bp upstream
Tssr30250	transcription start site region 30250	1823 bp upstream
Tssr30251	transcription start site region 30251	1870 bp upstream