rs30745672 SNP Detail

Summary

• ID
  rs30745672
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90415142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCT CCCTTTGAGT TCGAGGCTAG
  Y
  CAGGTCTACA TAGCAAGTTC CAGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45459528	mCV23476242	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss135476752	ENSMUSSNP2063573	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
ss320837921	CHEV_3_90311757	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30745672					SNP	C	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90415142 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chtop	chromatin target of PRMT1			Intron
				Noncoding-Transcript-Variant
Cpgi13465	CpG island 13465			926 bp proximal
Gm56783	predicted gene, 56783			1129 bp upstream
Rr397813	regulatory region 397813			1541 bp upstream
Rr580381	regulatory region 580381			639 bp proximal
Rr580382	regulatory region 580382			1067 bp proximal
Rr580383	regulatory region 580383			1605 bp proximal
Tssr30207	transcription start site region 30207			1242 bp upstream
Tssr30208	transcription start site region 30208			1805 bp upstream
Tssr34235	transcription start site region 34235			1454 bp upstream
Tssr34236	transcription start site region 34236			224 bp downstream
Tssr34237	transcription start site region 34237			892 bp downstream
Tssr34238	transcription start site region 34238			1621 bp downstream
Tssr34239	transcription start site region 34239			1682 bp downstream