rs30738139 SNP Detail

Summary

• ID
  rs30738139
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58068749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGGAGAT GTACTGGCTT
  ACACATCTCT GGCACTCCAG AGGGGAGTGG CAAAAAACAA ACAAACAAAA AAAACAAAAC
  AAAATAGCAG ATGCTAATTG CAACAAAAAC TCCCAAACCG ACTGAGACTA AGAGGACAAG
  GCCAGAGGTG GCAGGTTTCT GCCGCAGAAT TTAACCTCTG TCATCTCCTG CAGCCAGAAA
  S
  AAGGTTGTGA AGAAAATCCA GTCCACAGCC AGAGTAATAA AGGCAGTTGA GTTTACACCC
  TGATACTCCT ATTGTGGGGA TATAAAAGTT CTGATAAAGA GTGGAACCTG AGGCACAGGA
  TAGGAACCCA AGATGGTACT CTAAAGTATG TTGGTCCTGT AGACACCTAC AAACCTCTAG
  TAACATAAGT GTCCTGTCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46979595	NES10791078	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30738139					SNP	C	C	C	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46979595	NES10791078	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58068749 () rs orientation: forward

Symbol	Name	Function Class
1700007F19Rik	RIKEN cDNA 1700007F19 gene	within coordinates
4921539H07Rik	RIKEN cDNA 4921539H07 gene	within coordinates
Gm40056	predicted gene, 40056	within coordinates
Rr577194	regulatory region 577194	1560 bp distal
Rr577195	regulatory region 577195	1700 bp distal
Rr577196	regulatory region 577196	810 bp proximal