rs30738134 SNP Detail

Summary

• ID
  rs30738134
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58066935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTATATCT GATCCTGATT
  CATTCTTATG AAAATCATGT ATACTTATTT TTAAAATTAA CAATAGTATA CTGTAAAAGA
  AGTCTCCACA TGGAATTTTT GGTATGATTA AAATGTCGCC ATGCCACTGT TTTAGTCTAC
  ATTTCAGGTT TTTCTCAGGC CCTTCCAGCT CACTGGAGAC CTCCTCTCTC CTAGCTTGAG
  Y
  GCACTTCCCA TATTTTCAGT CTGGGTTATG TTGAAGCTCT TGGGGGTCCT TCTTGTCACC
  TGCCATGCTT TTAAGCATGG CTCTTCACAT CACTGGCTCC CTCTTGTGGC TATAAGTGGT
  TATTGCATAC CCACTACAAT GCAAGGATGA GTAAATAAAT GCTCCTGGAT AGAGCTAAGC
  GTCAAATAGA ACCCAGCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46979589	NES10791110	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30738134					SNP	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46979589	NES10791110	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58066935 () rs orientation: forward

Symbol	Name	Function Class
1700007F19Rik	RIKEN cDNA 1700007F19 gene	within coordinates
4921539H07Rik	RIKEN cDNA 4921539H07 gene	within coordinates
Gm40056	predicted gene, 40056	within coordinates
Rr577194	regulatory region 577194	within coordinates
Rr577195	regulatory region 577195	93 bp proximal