rs30737352 SNP Detail

Summary

• ID
  rs30737352
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58065221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATATCCC TGAGGAAATC
  TTGAGAGCCG AGCAGCATGG AGCTTTGCTC CAAAAGGAAG CAATCTTGTT TATTGGAAGC
  TAAGTATGCT ACTGACTGAT GCATGTATCT TCAGAAACCC ACAGACCTTT ATTTTGATAT
  ATTTGATCTT AAAGCATTCC ATTGGACTGA AAAAAAATCC ACTCTCCCTT TCACGGGTAA
  Y
  GCCTACACTG CCTTTATTGA AGAACCAAAG GAAGAATAGC TGGGTTATCT TTTATTTTCA
  TTTCAAATGT TGTAGAAACT TGAATGGTAG TAAAACTGGT CTTAACATGT TTTTATCTTC
  AGATTTATAA AGTCAATGAT AGCCATGATG AAATCTTCAA ACTGCTCATC AGTTTCGTCT
  TGAGGAACCA CTGCAAACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46979587	NES10791169	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30737352					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46979587	NES10791169	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58065221 () rs orientation: forward

Symbol	Name	Function Class
1700007F19Rik	RIKEN cDNA 1700007F19 gene	within coordinates
4921539H07Rik	RIKEN cDNA 4921539H07 gene	within coordinates
Gm40056	predicted gene, 40056	within coordinates
Rr577194	regulatory region 577194	1693 bp proximal
Rr577195	regulatory region 577195	1807 bp proximal