rs30730901 SNP Detail

Summary

• ID
  rs30730901
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:154427743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATCAGTCT GAGAGAACTG
  TTCAAGACTG AAGAGTGGCT TTGTTAGGAG CTACCATGAG GTGCAGCAGC CAGAGGGATT
  TATCCAGGCT ATCAAAGATC TGTCTTCAGT GGTGTGTGAT TCTGTGAAAC GAGAATAGGT
  TTTAGGTTTC CGTAGAGAAT AAATAAAAGC ATCCGTTTGT ACTTTTGGAA TAGCTCACTC
  R
  CTGAAATGTG GCATTTGTTA ATTTTTTTTG CTTCTTGAAA ATTAAGAATA ACAATAAAGA
  TGATGGAAGA ATGGGGCTAA GAGCATCCTT TTAGTCCCAA AGTAATTCCC AGTGCTTGTT
  GTAGTCAGGT TTGTAAAGTC TGAGGCACAG TGAGCTGCTT TAATGCACCC ACGGAGAGCC
  TGGCCTGTTT TCACTTCTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45468726	mCV22840601	ABI	CRAMUS_MOUSE	f	SNP	G	G	A						A
ss47477723	NES10331300	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	A	A	A	A	A	G	A	A	G	A
ss136118404	ENSMUSSNP1670847	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30730901					SNP	G	G	A	G	A	G	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47477723	NES10331300	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154427743 () rs orientation: forward

Symbol	Name	Function Class
Erich3	glutamate rich 3	Intron
Rr587891	regulatory region 587891	1019 bp proximal
Rr587892	regulatory region 587892	1379 bp proximal