rs30730898 SNP Detail

Summary

• ID
  rs30730898
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:154427770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAAGAGTG GCTTTGTTAG
  GAGCTACCAT GAGGTGCAGC AGCCAGAGGG ATTTATCCAG GCTATCAAAG ATCTGTCTTC
  AGTGGTGTGT GATTCTGTGA AACGAGAATA GGTTTTAGGT TTCCGTAGAG AATAAATAAA
  AGCATCCGTT TGTACTTTTG GAATAGCTCA CTCGCTGAAA TGTGGCATTT GTTAATTTTT
  Y
  TTGCTTCTTG AAAATTAAGA ATAACAATAA AGATGATGGA AGAATGGGGC TAAGAGCATC
  CTTTTAGTCC CAAAGTAATT CCCAGTGCTT GTTGTAGTCA GGTTTGTAAA GTCTGAGGCA
  CAGTGAGCTG CTTTAATGCA CCCACGGAGA GCCTGGCCTG TTTTCACTTC TCATAAAGAC
  TGCAGTATCT TCCAGGCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45565488	mCV22840591	ABI	CRAMUS_MOUSE	f	SNP	T	T	C						C
ss47477720	NES10331301	PERLEGEN	MM_PANEL2	f	SNP	T			T	C	T	C	C	C	C	C	C	C	C
ss136118407	ENSMUSSNP1057876	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30730898					SNP	T	T	C	T	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47477720	NES10331301	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154427770 () rs orientation: forward

Symbol	Name	Function Class
Erich3	glutamate rich 3	Intron
Rr587891	regulatory region 587891	992 bp proximal
Rr587892	regulatory region 587892	1352 bp proximal