rs30729061 SNP Detail

Summary

• ID
  rs30729061
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:154428668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCAGCTA ATGGGATTCA
  GGGATTGTGT AAAACTTGGG GATGCTCTTG TGCAACCATT TCAGACTTGT ACATCATGGT
  CTCTGCTCAC TGTCAGCTCG CTCTCTCTCT CTCTGCTGAC TTGTTGAATC AGCAGTTGCT
  TTATTTTGCT GAATGAGGAA CCTGTTGTAC AGATGACTCC ATCCACTCTC CAGAGAATGA
  K
  TCCAGACGGG GATACAAACA GCAATAATAT TAATGATAAA TTAATGTATT ATAATGTGAC
  CCATGTAATA ACAATAATGC CTACAAGGAT GTACTGTAGC ATGTCTGTAC ACACACATTG
  TCATCTGTCT TAGCCAAGGT TCTCTAAAGG AGCAGAACTG ATAGATATCT ATGTGTGTGC
  GTCAGATATT TACTAGAGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47477702	NES10331310	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30729061					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47477702	NES10331310	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154428668 () rs orientation: forward

Symbol	Name	Function Class
Erich3	glutamate rich 3	Intron
Rr587891	regulatory region 587891	94 bp proximal
Rr587892	regulatory region 587892	454 bp proximal